Cluster: HRGMv2_0360_CGC61
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_00755
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_3573 | 4237983 | 4239434 | - | 3.A.1.131.2 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_3574 | 4239476 | 4241545 | - | GH13_14 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_3575 | 4241558 | 4242127 | - | RuvC |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_3576 | 4242124 | 4242429 | - | DUF4286 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_3577 | 4242490 | 4243794 | - | 2.A.35.1.5 |
Gene ID: HRGMv2_0360_1_3573
Type: TC
Location: 4237983 - 4239434 (-)
Type: TC
Location: 4237983 - 4239434 (-)
Gene ID: HRGMv2_0360_1_3574
Type: CAZyme
Location: 4239476 - 4241545 (-)
Type: CAZyme
Location: 4239476 - 4241545 (-)
Gene ID: HRGMv2_0360_1_3575
Type: pfam
Location: 4241558 - 4242127 (-)
Type: pfam
Location: 4241558 - 4242127 (-)
Gene ID: HRGMv2_0360_1_3576
Type: pfam
Location: 4242124 - 4242429 (-)
Type: pfam
Location: 4242124 - 4242429 (-)
Gene ID: HRGMv2_0360_1_3577
Type: TC
Location: 4242490 - 4243794 (-)
Type: TC
Location: 4242490 - 4243794 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.