Cluster: HRGMv2_0360_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_01072
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_705 | 818818 | 821292 | + | GH31_4 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_706 | 821441 | 824425 | + | 1.B.14.6.1 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_707 | 824443 | 826065 | + | 8.A.46.1.1 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_708 | 826174 | 827808 | - | 3.A.1.117.1 |
Gene ID: HRGMv2_0360_1_705
Type: CAZyme
Location: 818818 - 821292 (+)
Type: CAZyme
Location: 818818 - 821292 (+)
Gene ID: HRGMv2_0360_1_706
Type: TC
Location: 821441 - 824425 (+)
Type: TC
Location: 821441 - 824425 (+)
Gene ID: HRGMv2_0360_1_707
Type: TC
Location: 824443 - 826065 (+)
Type: TC
Location: 824443 - 826065 (+)
Gene ID: HRGMv2_0360_1_708
Type: TC
Location: 826174 - 827808 (-)
Type: TC
Location: 826174 - 827808 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.