Cluster: HRGMv2_0360_CGC34
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_00164
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1517 | 1812588 | 1815026 | - | GH2 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1518 | 1815167 | 1818001 | + | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1_2 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1519 | 1818047 | 1818970 | + | 2.A.115.1.2 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1520 | 1819079 | 1821670 | + | GH2 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1521 | 1821705 | 1824023 | + | GH20 |
Gene ID: HRGMv2_0360_1_1517
Type: CAZyme
Location: 1812588 - 1815026 (-)
Type: CAZyme
Location: 1812588 - 1815026 (-)
Gene ID: HRGMv2_0360_1_1518
Type: pfam
Location: 1815167 - 1818001 (+)
Type: pfam
Location: 1815167 - 1818001 (+)
Gene ID: HRGMv2_0360_1_1519
Type: TC
Location: 1818047 - 1818970 (+)
Type: TC
Location: 1818047 - 1818970 (+)
Gene ID: HRGMv2_0360_1_1520
Type: CAZyme
Location: 1819079 - 1821670 (+)
Type: CAZyme
Location: 1819079 - 1821670 (+)
Gene ID: HRGMv2_0360_1_1521
Type: CAZyme
Location: 1821705 - 1824023 (+)
Type: CAZyme
Location: 1821705 - 1824023 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.