Cluster: HRGMv2_0360_CGC55
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_01378
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_2393 | 2913583 | 2914608 | + | 2.A.7.6.1 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_2394 | 2914656 | 2915447 | + | Aldolase_II |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_2395 | 2915459 | 2916613 | + | Fe-ADH | Fe-ADH_2 | ADH_Fe_C |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2396 | 2916832 | 2918964 | + | GH3 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2397 | 2918994 | 2921726 | + | CBM67 | GH78 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2398 | 2921735 | 2924137 | + | PL40 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2399 | 2924181 | 2925581 | + | PL42 |
| sulfatase | HRGMv2_0360_1 | HRGMv2_0360_1_2400 | 2925770 | 2926624 | + | S1_8 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_2401 | 2926631 | 2927233 | + | DUF386 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2402 | 2927244 | 2930075 | + | CBM67 | GH78 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2403 | 2930082 | 2932112 | + | PL39 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_2404 | 2932126 | 2932284 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2405 | 2932317 | 2934641 | + | CBM67 | GH78 |
Gene ID: HRGMv2_0360_1_2393
Type: TC
Location: 2913583 - 2914608 (+)
Type: TC
Location: 2913583 - 2914608 (+)
Gene ID: HRGMv2_0360_1_2394
Type: pfam
Location: 2914656 - 2915447 (+)
Type: pfam
Location: 2914656 - 2915447 (+)
Gene ID: HRGMv2_0360_1_2395
Type: pfam
Location: 2915459 - 2916613 (+)
Type: pfam
Location: 2915459 - 2916613 (+)
Gene ID: HRGMv2_0360_1_2396
Type: CAZyme
Location: 2916832 - 2918964 (+)
Type: CAZyme
Location: 2916832 - 2918964 (+)
Gene ID: HRGMv2_0360_1_2397
Type: CAZyme
Location: 2918994 - 2921726 (+)
Type: CAZyme
Location: 2918994 - 2921726 (+)
Gene ID: HRGMv2_0360_1_2398
Type: CAZyme
Location: 2921735 - 2924137 (+)
Type: CAZyme
Location: 2921735 - 2924137 (+)
Gene ID: HRGMv2_0360_1_2399
Type: CAZyme
Location: 2924181 - 2925581 (+)
Type: CAZyme
Location: 2924181 - 2925581 (+)
Gene ID: HRGMv2_0360_1_2400
Type: sulfatase
Location: 2925770 - 2926624 (+)
Type: sulfatase
Location: 2925770 - 2926624 (+)
Gene ID: HRGMv2_0360_1_2401
Type: pfam
Location: 2926631 - 2927233 (+)
Type: pfam
Location: 2926631 - 2927233 (+)
Gene ID: HRGMv2_0360_1_2402
Type: CAZyme
Location: 2927244 - 2930075 (+)
Type: CAZyme
Location: 2927244 - 2930075 (+)
Gene ID: HRGMv2_0360_1_2403
Type: CAZyme
Location: 2930082 - 2932112 (+)
Type: CAZyme
Location: 2930082 - 2932112 (+)
Gene ID: HRGMv2_0360_1_2404
Type:
Location: 2932126 - 2932284 (+)
Type:
Location: 2932126 - 2932284 (+)
Gene ID: HRGMv2_0360_1_2405
Type: CAZyme
Location: 2932317 - 2934641 (+)
Type: CAZyme
Location: 2932317 - 2934641 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.