Cluster: HRGMv2_0360_CGC45
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_2062 | 2500633 | 2503929 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_2063 | 2503950 | 2505701 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2064 | 2505804 | 2508407 | + | GH31_4 |
Gene ID: HRGMv2_0360_1_2062
Type: TC
Location: 2500633 - 2503929 (+)
Type: TC
Location: 2500633 - 2503929 (+)
Gene ID: HRGMv2_0360_1_2063
Type: pfam
Location: 2503950 - 2505701 (+)
Type: pfam
Location: 2503950 - 2505701 (+)
Gene ID: HRGMv2_0360_1_2064
Type: CAZyme
Location: 2505804 - 2508407 (+)
Type: CAZyme
Location: 2505804 - 2508407 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.