Cluster: HRGMv2_0360_CGC28
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_00180
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1372 | 1620382 | 1621308 | + | GT8 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1373 | 1621322 | 1622107 | + | DUF5672 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1374 | 1622112 | 1623080 | + | GT32 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1375 | 1623083 | 1623988 | - | GT2 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1376 | 1623992 | 1624903 | - | Lip_A_acyltrans |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1377 | 1625044 | 1626885 | + | 3.A.1.106.1 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1378 | 1626954 | 1627850 | - | GT2 |
Gene ID: HRGMv2_0360_1_1372
Type: CAZyme
Location: 1620382 - 1621308 (+)
Type: CAZyme
Location: 1620382 - 1621308 (+)
Gene ID: HRGMv2_0360_1_1373
Type: pfam
Location: 1621322 - 1622107 (+)
Type: pfam
Location: 1621322 - 1622107 (+)
Gene ID: HRGMv2_0360_1_1374
Type: CAZyme
Location: 1622112 - 1623080 (+)
Type: CAZyme
Location: 1622112 - 1623080 (+)
Gene ID: HRGMv2_0360_1_1375
Type: CAZyme
Location: 1623083 - 1623988 (-)
Type: CAZyme
Location: 1623083 - 1623988 (-)
Gene ID: HRGMv2_0360_1_1376
Type: pfam
Location: 1623992 - 1624903 (-)
Type: pfam
Location: 1623992 - 1624903 (-)
Gene ID: HRGMv2_0360_1_1377
Type: TC
Location: 1625044 - 1626885 (+)
Type: TC
Location: 1625044 - 1626885 (+)
Gene ID: HRGMv2_0360_1_1378
Type: CAZyme
Location: 1626954 - 1627850 (-)
Type: CAZyme
Location: 1626954 - 1627850 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.