Genome Details
Selected Rep_genome_ID: HRGMv2_0360
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_0360 | 4,415,468 | 99.25% | 0.497% | NA | NA | HRGM |
| MGYG000004479 | 3,712,458 | 99.18% | 1.7% | Israel | Asia | UHGG |
| Rep_533 | 3,307,756 | 95.0041% | 0.273632% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0360_CGC40 | CGCFAM_01743 | Yes | 12 | 4 | |
| HRGMv2_0360_CGC25 | CGCFAM_01797 | Yes | 5 | 1 | |
| HRGMv2_0360_CGC53 | CGCFAM_02414 | Yes | 3 | 1 | |
| HRGMv2_0360_CGC42 | CGCFAM_02862 | Yes | 9 | 2 | |
| HRGMv2_0360_CGC54 | CGCFAM_02863 | Yes | 8 | 1 | |
| HRGMv2_0360_CGC10 | CGCFAM_02864 | Yes | 8 | 1 | |
| PUL0102_HRGMv2_0360_C0 | CGCFAM_04172 | Yes | 20 | 6 | host glycan |
| HRGMv2_0360_CGC19 | CGCFAM_04649 | Yes | 5 | 3 | |
| HRGMv2_0360_CGC52 | CGCFAM_04798 | Yes | 4 | 1 | |
| HRGMv2_0360_CGC24 | CGCFAM_05941 | Yes | 9 | 1 | |
| HRGMv2_0360_CGC56 | CGCFAM_05945 | Yes | 4 | 2 | |
| HRGMv2_0360_CGC6 | CGCFAM_06501 | Yes | 6 | 1 | |
| HRGMv2_0360_CGC27 | CGCFAM_08499 | Yes | 3 | 1 |
Top CAZyme Families