Cluster: HRGMv2_0360_CGC27
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_08499
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1365 | 1609529 | 1611814 | - | GH3 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1366 | 1612249 | 1612518 | - | Ribosomal_S15 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1367 | 1612632 | 1613627 | - | 2.A.4.7.7 |
Gene ID: HRGMv2_0360_1_1365
Type: CAZyme
Location: 1609529 - 1611814 (-)
Type: CAZyme
Location: 1609529 - 1611814 (-)
Gene ID: HRGMv2_0360_1_1366
Type: pfam
Location: 1612249 - 1612518 (-)
Type: pfam
Location: 1612249 - 1612518 (-)
Gene ID: HRGMv2_0360_1_1367
Type: TC
Location: 1612632 - 1613627 (-)
Type: TC
Location: 1612632 - 1613627 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.