Cluster: HRGMv2_0360_CGC25
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_01797
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1325 | 1561487 | 1562470 | + | GH43_29 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1326 | 1562516 | 1564351 | - | 1.I.1.1.3 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1327 | 1564467 | 1565399 | - | Flavokinase | FAD_syn |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1328 | 1565402 | 1566022 | - | Hydrolase | HAD_2 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1329 | 1566028 | 1568658 | - | 3.A.3.2.39 |
Gene ID: HRGMv2_0360_1_1325
Type: CAZyme
Location: 1561487 - 1562470 (+)
Type: CAZyme
Location: 1561487 - 1562470 (+)
Gene ID: HRGMv2_0360_1_1326
Type: TC
Location: 1562516 - 1564351 (-)
Type: TC
Location: 1562516 - 1564351 (-)
Gene ID: HRGMv2_0360_1_1327
Type: pfam
Location: 1564467 - 1565399 (-)
Type: pfam
Location: 1564467 - 1565399 (-)
Gene ID: HRGMv2_0360_1_1328
Type: pfam
Location: 1565402 - 1566022 (-)
Type: pfam
Location: 1565402 - 1566022 (-)
Gene ID: HRGMv2_0360_1_1329
Type: TC
Location: 1566028 - 1568658 (-)
Type: TC
Location: 1566028 - 1568658 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.