Cluster: HRGMv2_0360_CGC56
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_05945
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_2440 | 2989909 | 2991285 | + | 4.A.5.1.4 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_2441 | 2991346 | 2992269 | + | KduI |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2442 | 2992748 | 2995798 | + | GH2 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2443 | 2995810 | 2998305 | + | PL40 |
Gene ID: HRGMv2_0360_1_2440
Type: TC
Location: 2989909 - 2991285 (+)
Type: TC
Location: 2989909 - 2991285 (+)
Gene ID: HRGMv2_0360_1_2441
Type: pfam
Location: 2991346 - 2992269 (+)
Type: pfam
Location: 2991346 - 2992269 (+)
Gene ID: HRGMv2_0360_1_2442
Type: CAZyme
Location: 2992748 - 2995798 (+)
Type: CAZyme
Location: 2992748 - 2995798 (+)
Gene ID: HRGMv2_0360_1_2443
Type: CAZyme
Location: 2995810 - 2998305 (+)
Type: CAZyme
Location: 2995810 - 2998305 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.