Cluster: HRGMv2_0360_CGC53
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_02414
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2320 | 2837209 | 2839269 | + | GH20 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_2321 | 2839277 | 2840323 | - | OprB |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_2322 | 2840320 | 2842983 | - | 3.A.3.4.1 |
Gene ID: HRGMv2_0360_1_2320
Type: CAZyme
Location: 2837209 - 2839269 (+)
Type: CAZyme
Location: 2837209 - 2839269 (+)
Gene ID: HRGMv2_0360_1_2321
Type: pfam
Location: 2839277 - 2840323 (-)
Type: pfam
Location: 2839277 - 2840323 (-)
Gene ID: HRGMv2_0360_1_2322
Type: TC
Location: 2840320 - 2842983 (-)
Type: TC
Location: 2840320 - 2842983 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.