Cluster: HRGMv2_0360_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_04649
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1110 | 1311952 | 1314321 | + | GH2 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1111 | 1314675 | 1314899 | + | TatA_B_E |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1112 | 1314905 | 1315717 | + | 2.A.64.3.2 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1113 | 1315727 | 1317955 | - | GH92 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1114 | 1318024 | 1318995 | - | GH130_2 |
Gene ID: HRGMv2_0360_1_1110
Type: CAZyme
Location: 1311952 - 1314321 (+)
Type: CAZyme
Location: 1311952 - 1314321 (+)
Gene ID: HRGMv2_0360_1_1111
Type: pfam
Location: 1314675 - 1314899 (+)
Type: pfam
Location: 1314675 - 1314899 (+)
Gene ID: HRGMv2_0360_1_1112
Type: TC
Location: 1314905 - 1315717 (+)
Type: TC
Location: 1314905 - 1315717 (+)
Gene ID: HRGMv2_0360_1_1113
Type: CAZyme
Location: 1315727 - 1317955 (-)
Type: CAZyme
Location: 1315727 - 1317955 (-)
Gene ID: HRGMv2_0360_1_1114
Type: CAZyme
Location: 1318024 - 1318995 (-)
Type: CAZyme
Location: 1318024 - 1318995 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.