Cluster: PUL0102_HRGMv2_0360_C0
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 6
- Substrate: host glycan
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_04172
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| pfam | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1424 | 1697580 | 1699058 | - | FGGY_N | FGGY_C |
| TF | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1425 | 1699222 | 1700115 | + | HTH_AraC | HTH_AraC |
| CAZyme | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1426 | 1700124 | 1703615 | - | CBM67 | GH78 |
| pfam | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1428 | 1705662 | 1705982 | + | DUF3836 |
| TC | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1429 | 1706009 | 1706842 | + | 9.B.2.1.5 |
| pfam | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1431 | 1707538 | 1707990 | + | DUF2975 |
| TF | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1432 | 1708005 | 1708214 | + | HTH_3 |
| TF | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1434 | 1710060 | 1711268 | - | MarR |
| pfam | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1436 | 1712764 | 1713681 | + | DHDPS |
| pfam | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1437 | 1713693 | 1714880 | + | GlcNAc_2-epim |
| pfam | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1438 | 1714920 | 1716158 | + | MFS_1 | MFS_1 |
| pfam | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1439 | 1716174 | 1716620 | + | DUF386 |
| CAZyme | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1440 | 1716636 | 1718258 | + | CBM93 | GH33 |
| TC | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1441 | 1718613 | 1721966 | + | 1.B.14.6.1 |
| TC | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1442 | 1721981 | 1723540 | + | 8.A.46.1.4 |
| CAZyme | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1443 | 1723659 | 1725140 | + | GH29 |
| CAZyme | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1444 | 1725155 | 1727155 | + | GH20 |
| CAZyme | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1445 | 1727182 | 1727844 | + | CE3 |
| CAZyme | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1446 | 1727846 | 1729915 | + | CE20 |
| pfam | PUL0102_HRGMv2_0360_C0 | HRGMv2_0360_1_1447 | 1730018 | 1731538 | + | UPF0020 | THUMP | RlmL_1st |
Gene ID: HRGMv2_0360_1_1424
Type: pfam
Location: 1697580 - 1699058 (-)
Type: pfam
Location: 1697580 - 1699058 (-)
Gene ID: HRGMv2_0360_1_1425
Type: TF
Location: 1699222 - 1700115 (+)
Type: TF
Location: 1699222 - 1700115 (+)
Gene ID: HRGMv2_0360_1_1426
Type: CAZyme
Location: 1700124 - 1703615 (-)
Type: CAZyme
Location: 1700124 - 1703615 (-)
Gene ID: HRGMv2_0360_1_1428
Type: pfam
Location: 1705662 - 1705982 (+)
Type: pfam
Location: 1705662 - 1705982 (+)
Gene ID: HRGMv2_0360_1_1429
Type: TC
Location: 1706009 - 1706842 (+)
Type: TC
Location: 1706009 - 1706842 (+)
Gene ID: HRGMv2_0360_1_1431
Type: pfam
Location: 1707538 - 1707990 (+)
Type: pfam
Location: 1707538 - 1707990 (+)
Gene ID: HRGMv2_0360_1_1432
Type: TF
Location: 1708005 - 1708214 (+)
Type: TF
Location: 1708005 - 1708214 (+)
Gene ID: HRGMv2_0360_1_1434
Type: TF
Location: 1710060 - 1711268 (-)
Type: TF
Location: 1710060 - 1711268 (-)
Gene ID: HRGMv2_0360_1_1436
Type: pfam
Location: 1712764 - 1713681 (+)
Type: pfam
Location: 1712764 - 1713681 (+)
Gene ID: HRGMv2_0360_1_1437
Type: pfam
Location: 1713693 - 1714880 (+)
Type: pfam
Location: 1713693 - 1714880 (+)
Gene ID: HRGMv2_0360_1_1438
Type: pfam
Location: 1714920 - 1716158 (+)
Type: pfam
Location: 1714920 - 1716158 (+)
Gene ID: HRGMv2_0360_1_1439
Type: pfam
Location: 1716174 - 1716620 (+)
Type: pfam
Location: 1716174 - 1716620 (+)
Gene ID: HRGMv2_0360_1_1440
Type: CAZyme
Location: 1716636 - 1718258 (+)
Type: CAZyme
Location: 1716636 - 1718258 (+)
Gene ID: HRGMv2_0360_1_1441
Type: TC
Location: 1718613 - 1721966 (+)
Type: TC
Location: 1718613 - 1721966 (+)
Gene ID: HRGMv2_0360_1_1442
Type: TC
Location: 1721981 - 1723540 (+)
Type: TC
Location: 1721981 - 1723540 (+)
Gene ID: HRGMv2_0360_1_1443
Type: CAZyme
Location: 1723659 - 1725140 (+)
Type: CAZyme
Location: 1723659 - 1725140 (+)
Gene ID: HRGMv2_0360_1_1444
Type: CAZyme
Location: 1725155 - 1727155 (+)
Type: CAZyme
Location: 1725155 - 1727155 (+)
Gene ID: HRGMv2_0360_1_1445
Type: CAZyme
Location: 1727182 - 1727844 (+)
Type: CAZyme
Location: 1727182 - 1727844 (+)
Gene ID: HRGMv2_0360_1_1446
Type: CAZyme
Location: 1727846 - 1729915 (+)
Type: CAZyme
Location: 1727846 - 1729915 (+)
Gene ID: HRGMv2_0360_1_1447
Type: pfam
Location: 1730018 - 1731538 (+)
Type: pfam
Location: 1730018 - 1731538 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Composition
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