Cluster: HRGMv2_0360_CGC40
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_01743
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1864 | 2242437 | 2243621 | + | 2.A.1.2.14 |
| TF | HRGMv2_0360_1 | HRGMv2_0360_1_1865 | 2243633 | 2247778 | + | HTH_AraC |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1866 | 2247888 | 2249288 | - | GH28 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1867 | 2249315 | 2251678 | - | GH92 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1868 | 2251834 | 2253504 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1869 | 2253530 | 2256544 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_1870 | 2256578 | 2257645 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1871 | 2257681 | 2259849 | - | GH89 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1872 | 2260026 | 2261375 | + | 2.A.66.1.45 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_1873 | 2261395 | 2261610 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1874 | 2261667 | 2262440 | - | Shikimate_DH | ApbA | NAD_binding_2 | F420_oxidored | P5CR_dimer |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1875 | 2262931 | 2264343 | + | CE20 |
Gene ID: HRGMv2_0360_1_1864
Type: TC
Location: 2242437 - 2243621 (+)
Type: TC
Location: 2242437 - 2243621 (+)
Gene ID: HRGMv2_0360_1_1865
Type: TF
Location: 2243633 - 2247778 (+)
Type: TF
Location: 2243633 - 2247778 (+)
Gene ID: HRGMv2_0360_1_1866
Type: CAZyme
Location: 2247888 - 2249288 (-)
Type: CAZyme
Location: 2247888 - 2249288 (-)
Gene ID: HRGMv2_0360_1_1867
Type: CAZyme
Location: 2249315 - 2251678 (-)
Type: CAZyme
Location: 2249315 - 2251678 (-)
Gene ID: HRGMv2_0360_1_1868
Type: pfam
Location: 2251834 - 2253504 (-)
Type: pfam
Location: 2251834 - 2253504 (-)
Gene ID: HRGMv2_0360_1_1869
Type: TC
Location: 2253530 - 2256544 (-)
Type: TC
Location: 2253530 - 2256544 (-)
Gene ID: HRGMv2_0360_1_1870
Type:
Location: 2256578 - 2257645 (-)
Type:
Location: 2256578 - 2257645 (-)
Gene ID: HRGMv2_0360_1_1871
Type: CAZyme
Location: 2257681 - 2259849 (-)
Type: CAZyme
Location: 2257681 - 2259849 (-)
Gene ID: HRGMv2_0360_1_1872
Type: TC
Location: 2260026 - 2261375 (+)
Type: TC
Location: 2260026 - 2261375 (+)
Gene ID: HRGMv2_0360_1_1873
Type:
Location: 2261395 - 2261610 (-)
Type:
Location: 2261395 - 2261610 (-)
Gene ID: HRGMv2_0360_1_1874
Type: pfam
Location: 2261667 - 2262440 (-)
Type: pfam
Location: 2261667 - 2262440 (-)
Gene ID: HRGMv2_0360_1_1875
Type: CAZyme
Location: 2262931 - 2264343 (+)
Type: CAZyme
Location: 2262931 - 2264343 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.