Cluster: HRGMv2_0360_CGC52
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_04798
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_2202 | 2701142 | 2701915 | - | GH23 |
| NULL(UNKNOWN) | HRGMv2_0360_1 | HRGMv2_0360_1_2203 | 2701934 | 2702317 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_2204 | 2702622 | 2703776 | + | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_2205 | 2703789 | 2706899 | + | 2.A.6.1.5 |
Gene ID: HRGMv2_0360_1_2202
Type: CAZyme
Location: 2701142 - 2701915 (-)
Type: CAZyme
Location: 2701142 - 2701915 (-)
Gene ID: HRGMv2_0360_1_2203
Type:
Location: 2701934 - 2702317 (-)
Type:
Location: 2701934 - 2702317 (-)
Gene ID: HRGMv2_0360_1_2204
Type: pfam
Location: 2702622 - 2703776 (+)
Type: pfam
Location: 2702622 - 2703776 (+)
Gene ID: HRGMv2_0360_1_2205
Type: TC
Location: 2703789 - 2706899 (+)
Type: TC
Location: 2703789 - 2706899 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.