Cluster: HRGMv2_0360_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_06501
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_161 | 204117 | 206402 | - | GH92 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_162 | 206493 | 208163 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_163 | 208189 | 211203 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_164 | 211482 | 213155 | - | Metallophos |
| STP | HRGMv2_0360_1 | HRGMv2_0360_1_165 | 213398 | 213775 | - | Nitro_FeMo-Co |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_166 | 213818 | 214771 | - | 9.B.125.2.1 |
Gene ID: HRGMv2_0360_1_161
Type: CAZyme
Location: 204117 - 206402 (-)
Type: CAZyme
Location: 204117 - 206402 (-)
Gene ID: HRGMv2_0360_1_162
Type: pfam
Location: 206493 - 208163 (-)
Type: pfam
Location: 206493 - 208163 (-)
Gene ID: HRGMv2_0360_1_163
Type: TC
Location: 208189 - 211203 (-)
Type: TC
Location: 208189 - 211203 (-)
Gene ID: HRGMv2_0360_1_164
Type: pfam
Location: 211482 - 213155 (-)
Type: pfam
Location: 211482 - 213155 (-)
Gene ID: HRGMv2_0360_1_165
Type: STP
Location: 213398 - 213775 (-)
Type: STP
Location: 213398 - 213775 (-)
Gene ID: HRGMv2_0360_1_166
Type: TC
Location: 213818 - 214771 (-)
Type: TC
Location: 213818 - 214771 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.