Cluster: HRGMv2_0360_CGC32
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_00352
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1451 | 1736010 | 1736474 | + | 9.B.27.3.2 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1452 | 1736543 | 1737205 | + | Methyltransf_30 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1453 | 1737561 | 1738433 | + | ZnuA |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1454 | 1738444 | 1739211 | + | 3.A.1.15.1 |
| pfam | HRGMv2_0360_1 | HRGMv2_0360_1_1455 | 1739323 | 1742655 | + | TMEM260-like |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1456 | 1742798 | 1743409 | + | CE4 |
Gene ID: HRGMv2_0360_1_1451
Type: TC
Location: 1736010 - 1736474 (+)
Type: TC
Location: 1736010 - 1736474 (+)
Gene ID: HRGMv2_0360_1_1452
Type: pfam
Location: 1736543 - 1737205 (+)
Type: pfam
Location: 1736543 - 1737205 (+)
Gene ID: HRGMv2_0360_1_1453
Type: pfam
Location: 1737561 - 1738433 (+)
Type: pfam
Location: 1737561 - 1738433 (+)
Gene ID: HRGMv2_0360_1_1454
Type: TC
Location: 1738444 - 1739211 (+)
Type: TC
Location: 1738444 - 1739211 (+)
Gene ID: HRGMv2_0360_1_1455
Type: pfam
Location: 1739323 - 1742655 (+)
Type: pfam
Location: 1739323 - 1742655 (+)
Gene ID: HRGMv2_0360_1_1456
Type: CAZyme
Location: 1742798 - 1743409 (+)
Type: CAZyme
Location: 1742798 - 1743409 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.