Cluster: HRGMv2_0360_CGC43
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0360
- CGC Family ID: CGCFAM_00388
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1956 | 2359819 | 2363064 | + | 1.B.14.6.1 |
| TC | HRGMv2_0360_1 | HRGMv2_0360_1_1957 | 2363071 | 2364828 | + | 8.A.46.1.6 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1958 | 2364908 | 2367796 | + | GH115 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1959 | 2367868 | 2369502 | + | GH31_3 |
| CAZyme | HRGMv2_0360_1 | HRGMv2_0360_1_1960 | 2369652 | 2371412 | + | GH29 |
Gene ID: HRGMv2_0360_1_1956
Type: TC
Location: 2359819 - 2363064 (+)
Type: TC
Location: 2359819 - 2363064 (+)
Gene ID: HRGMv2_0360_1_1957
Type: TC
Location: 2363071 - 2364828 (+)
Type: TC
Location: 2363071 - 2364828 (+)
Gene ID: HRGMv2_0360_1_1958
Type: CAZyme
Location: 2364908 - 2367796 (+)
Type: CAZyme
Location: 2364908 - 2367796 (+)
Gene ID: HRGMv2_0360_1_1959
Type: CAZyme
Location: 2367868 - 2369502 (+)
Type: CAZyme
Location: 2367868 - 2369502 (+)
Gene ID: HRGMv2_0360_1_1960
Type: CAZyme
Location: 2369652 - 2371412 (+)
Type: CAZyme
Location: 2369652 - 2371412 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola mediterraneensis_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.