Genome Details
Selected Rep_genome_ID: HRGMv2_4308
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Brotaphodocola
Species
Brotaphodocola merdavium
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_4308 | 3,557,095 | 93.8% | 0.105% | Japan | Asia | HRGM |
| Rep_2093 | 3,437,681 | 96.2421% | 3.69198% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_4308_CGC33 | CGCFAM_00020 | Yes | 5 | 1 | host glycan/beta-glucan |
| HRGMv2_4308_CGC13 | CGCFAM_00027 | Yes | 3 | 1 | |
| HRGMv2_4308_CGC29 | CGCFAM_00027 | Yes | 4 | 1 | |
| HRGMv2_4308_CGC38 | CGCFAM_00027 | Yes | 3 | 1 | |
| HRGMv2_4308_CGC47 | CGCFAM_00041 | Yes | 4 | 2 | |
| HRGMv2_4308_CGC18 | CGCFAM_00157 | Yes | 6 | 2 | |
| HRGMv2_4308_CGC50 | CGCFAM_00277 | Yes | 6 | 1 | |
| HRGMv2_4308_CGC17 | CGCFAM_00353 | Yes | 9 | 2 | |
| HRGMv2_4308_CGC14 | CGCFAM_00422 | Yes | 5 | 1 | |
| HRGMv2_4308_CGC30 | CGCFAM_00452 | Yes | 5 | 1 | |
| HRGMv2_4308_CGC24 | CGCFAM_00499 | Yes | 3 | 1 | |
| HRGMv2_4308_CGC20 | CGCFAM_00563 | Yes | 7 | 3 | |
| HRGMv2_4308_CGC56 | CGCFAM_00609 | Yes | 4 | 1 | |
| HRGMv2_4308_CGC48 | CGCFAM_00659 | Yes | 3 | 1 | |
| HRGMv2_4308_CGC51 | CGCFAM_01033 | Yes | 5 | 1 | |
| HRGMv2_4308_CGC22 | CGCFAM_01280 | Yes | 7 | 2 | |
| HRGMv2_4308_CGC32 | CGCFAM_02060 | Yes | 7 | 2 | |
| HRGMv2_4308_CGC23 | CGCFAM_02902 | Yes | 11 | 1 | |
| HRGMv2_4308_CGC5 | CGCFAM_03087 | Yes | 6 | 3 | |
| HRGMv2_4308_CGC54 | CGCFAM_03419 | Yes | 3 | 1 | |
| HRGMv2_4308_CGC4 | CGCFAM_04893 | Yes | 8 | 2 | |
| HRGMv2_4308_CGC53 | CGCFAM_06077 | Yes | 5 | 2 | |
| HRGMv2_4308_CGC12 | CGCFAM_07724 | Yes | 4 | 1 |
Top CAZyme Families