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Cluster: HRGMv2_4308_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4308_26 HRGMv2_4308_26_14 17438 18577 - GH105
TF HRGMv2_4308_26 HRGMv2_4308_26_15 18649 19584 + HTH_AraC | HTH_AraC
TC HRGMv2_4308_26 HRGMv2_4308_26_16 19678 20982 - 2.A.56.1.5
TC HRGMv2_4308_26 HRGMv2_4308_26_17 20983 21450 - 2.A.56.1.5
TC HRGMv2_4308_26 HRGMv2_4308_26_18 21465 22487 - 2.A.56.1.5
pfam HRGMv2_4308_26 HRGMv2_4308_26_19 22821 23225 - ACT_8
TC HRGMv2_4308_26 HRGMv2_4308_26_20 23430 24926 + 8.A.59.2.1
TF HRGMv2_4308_26 HRGMv2_4308_26_21 24919 25917 + HTH_AraC | HTH_AraC
TC HRGMv2_4308_26 HRGMv2_4308_26_22 26085 27221 + 2.A.56.1.1
pfam HRGMv2_4308_26 HRGMv2_4308_26_23 27338 27859 + DctQ
TC HRGMv2_4308_26 HRGMv2_4308_26_24 27861 29153 + 2.A.56.1.5
Gene ID: HRGMv2_4308_26_14
Type: CAZyme
Location: 17438 - 18577 (-)
Gene ID: HRGMv2_4308_26_15
Type: TF
Location: 18649 - 19584 (+)
Gene ID: HRGMv2_4308_26_16
Type: TC
Location: 19678 - 20982 (-)
Gene ID: HRGMv2_4308_26_17
Type: TC
Location: 20983 - 21450 (-)
Gene ID: HRGMv2_4308_26_18
Type: TC
Location: 21465 - 22487 (-)
Gene ID: HRGMv2_4308_26_19
Type: pfam
Location: 22821 - 23225 (-)
Gene ID: HRGMv2_4308_26_20
Type: TC
Location: 23430 - 24926 (+)
Gene ID: HRGMv2_4308_26_21
Type: TF
Location: 24919 - 25917 (+)
Gene ID: HRGMv2_4308_26_22
Type: TC
Location: 26085 - 27221 (+)
Gene ID: HRGMv2_4308_26_23
Type: pfam
Location: 27338 - 27859 (+)
Gene ID: HRGMv2_4308_26_24
Type: TC
Location: 27861 - 29153 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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