Cluster: HRGMv2_4308_CGC22
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4308
- CGC Family ID: CGCFAM_01280
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4308_25 | HRGMv2_4308_25_2 | 377 | 1270 | - | 3.A.1.1.9 |
| TC | HRGMv2_4308_25 | HRGMv2_4308_25_3 | 1284 | 2237 | - | 3.A.1.1.9 |
| TC | HRGMv2_4308_25 | HRGMv2_4308_25_4 | 2239 | 3960 | - | 3.A.1.1.10 |
| TC | HRGMv2_4308_25 | HRGMv2_4308_25_5 | 4136 | 5833 | - | 8.A.59.2.1 |
| TF | HRGMv2_4308_25 | HRGMv2_4308_25_6 | 5830 | 7383 | - | HTH_AraC |
| CAZyme | HRGMv2_4308_25 | HRGMv2_4308_25_7 | 7498 | 9198 | - | GH13_31 |
| CAZyme | HRGMv2_4308_25 | HRGMv2_4308_25_8 | 9218 | 10858 | - | GH13_31 |
Gene ID: HRGMv2_4308_25_2
Type: TC
Location: 377 - 1270 (-)
Type: TC
Location: 377 - 1270 (-)
Gene ID: HRGMv2_4308_25_3
Type: TC
Location: 1284 - 2237 (-)
Type: TC
Location: 1284 - 2237 (-)
Gene ID: HRGMv2_4308_25_4
Type: TC
Location: 2239 - 3960 (-)
Type: TC
Location: 2239 - 3960 (-)
Gene ID: HRGMv2_4308_25_5
Type: TC
Location: 4136 - 5833 (-)
Type: TC
Location: 4136 - 5833 (-)
Gene ID: HRGMv2_4308_25_6
Type: TF
Location: 5830 - 7383 (-)
Type: TF
Location: 5830 - 7383 (-)
Gene ID: HRGMv2_4308_25_7
Type: CAZyme
Location: 7498 - 9198 (-)
Type: CAZyme
Location: 7498 - 9198 (-)
Gene ID: HRGMv2_4308_25_8
Type: CAZyme
Location: 9218 - 10858 (-)
Type: CAZyme
Location: 9218 - 10858 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Brotaphodocola
Species
Brotaphodocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.