Cluster: HRGMv2_4308_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4308
- CGC Family ID: CGCFAM_00422
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4308_11 | HRGMv2_4308_11_21 | 20801 | 22492 | + | GH13_31 |
| TF | HRGMv2_4308_11 | HRGMv2_4308_11_22 | 22464 | 23369 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4308_11 | HRGMv2_4308_11_23 | 23530 | 24852 | + | 3.A.1.1.45 |
| TC | HRGMv2_4308_11 | HRGMv2_4308_11_24 | 24870 | 25712 | + | 3.A.1.1.45 |
| TC | HRGMv2_4308_11 | HRGMv2_4308_11_25 | 25712 | 26551 | + | 3.A.1.1.45 |
Gene ID: HRGMv2_4308_11_21
Type: CAZyme
Location: 20801 - 22492 (+)
Type: CAZyme
Location: 20801 - 22492 (+)
Gene ID: HRGMv2_4308_11_22
Type: TF
Location: 22464 - 23369 (-)
Type: TF
Location: 22464 - 23369 (-)
Gene ID: HRGMv2_4308_11_23
Type: TC
Location: 23530 - 24852 (+)
Type: TC
Location: 23530 - 24852 (+)
Gene ID: HRGMv2_4308_11_24
Type: TC
Location: 24870 - 25712 (+)
Type: TC
Location: 24870 - 25712 (+)
Gene ID: HRGMv2_4308_11_25
Type: TC
Location: 25712 - 26551 (+)
Type: TC
Location: 25712 - 26551 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Brotaphodocola
Species
Brotaphodocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.