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Cluster: HRGMv2_4308_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4308_16 HRGMv2_4308_16_10 9568 10743 - GH88
CAZyme HRGMv2_4308_16 HRGMv2_4308_16_11 10780 12807 - PL12_1
TC HRGMv2_4308_16 HRGMv2_4308_16_12 12848 13675 - 3.A.1.1.34
TC HRGMv2_4308_16 HRGMv2_4308_16_13 13688 14581 - 3.A.1.1.36
STP HRGMv2_4308_16 HRGMv2_4308_16_14 14716 16059 - SBP_bac_1
TF HRGMv2_4308_16 HRGMv2_4308_16_15 16200 17834 - HTH_AraC | HTH_AraC
TC HRGMv2_4308_16 HRGMv2_4308_16_16 17809 19611 - 8.A.59.2.1
NULL(UNKNOWN) HRGMv2_4308_16 HRGMv2_4308_16_17 19716 20144 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4308_16 HRGMv2_4308_16_18 20290 20817 - 4.A.1.2.6
Gene ID: HRGMv2_4308_16_10
Type: CAZyme
Location: 9568 - 10743 (-)
Gene ID: HRGMv2_4308_16_11
Type: CAZyme
Location: 10780 - 12807 (-)
Gene ID: HRGMv2_4308_16_12
Type: TC
Location: 12848 - 13675 (-)
Gene ID: HRGMv2_4308_16_13
Type: TC
Location: 13688 - 14581 (-)
Gene ID: HRGMv2_4308_16_14
Type: STP
Location: 14716 - 16059 (-)
Gene ID: HRGMv2_4308_16_15
Type: TF
Location: 16200 - 17834 (-)
Gene ID: HRGMv2_4308_16_16
Type: TC
Location: 17809 - 19611 (-)
Gene ID: HRGMv2_4308_16_17
Type:
Location: 19716 - 20144 (-)
Gene ID: HRGMv2_4308_16_18
Type: TC
Location: 20290 - 20817 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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