Cluster: HRGMv2_4308_CGC53
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4308
- CGC Family ID: CGCFAM_06077
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4308_161 | HRGMv2_4308_161_1 | 2 | 1765 | + | GH2 |
| pfam | HRGMv2_4308_161 | HRGMv2_4308_161_2 | 1861 | 2466 | - | Hexapep | Mac | Hexapep_2 |
| TF | HRGMv2_4308_161 | HRGMv2_4308_161_3 | 2558 | 3475 | - | HTH_1 |
| TC | HRGMv2_4308_161 | HRGMv2_4308_161_4 | 3632 | 4993 | + | 4.A.1.2.3 |
| CAZyme | HRGMv2_4308_161 | HRGMv2_4308_161_5 | 5072 | 6547 | + | GH1 |
Gene ID: HRGMv2_4308_161_1
Type: CAZyme
Location: 2 - 1765 (+)
Type: CAZyme
Location: 2 - 1765 (+)
Gene ID: HRGMv2_4308_161_2
Type: pfam
Location: 1861 - 2466 (-)
Type: pfam
Location: 1861 - 2466 (-)
Gene ID: HRGMv2_4308_161_3
Type: TF
Location: 2558 - 3475 (-)
Type: TF
Location: 2558 - 3475 (-)
Gene ID: HRGMv2_4308_161_4
Type: TC
Location: 3632 - 4993 (+)
Type: TC
Location: 3632 - 4993 (+)
Gene ID: HRGMv2_4308_161_5
Type: CAZyme
Location: 5072 - 6547 (+)
Type: CAZyme
Location: 5072 - 6547 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Brotaphodocola
Species
Brotaphodocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.