Cluster: HRGMv2_4308_CGC33
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: host glycan/beta-glucan
- Genome ID: HRGMv2_4308
- CGC Family ID: CGCFAM_00020
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4308_62 | HRGMv2_4308_62_2 | 349 | 1488 | + | 2.A.1.15.18 |
| pfam | HRGMv2_4308_62 | HRGMv2_4308_62_3 | 1711 | 2934 | + | PFK |
| pfam | HRGMv2_4308_62 | HRGMv2_4308_62_4 | 3319 | 4152 | + | PRD | PRD | CAT_RBD |
| TC | HRGMv2_4308_62 | HRGMv2_4308_62_5 | 4407 | 6308 | + | 4.A.1.2.11 |
| CAZyme | HRGMv2_4308_62 | HRGMv2_4308_62_6 | 6345 | 7775 | + | GH1 |
Gene ID: HRGMv2_4308_62_2
Type: TC
Location: 349 - 1488 (+)
Type: TC
Location: 349 - 1488 (+)
Gene ID: HRGMv2_4308_62_3
Type: pfam
Location: 1711 - 2934 (+)
Type: pfam
Location: 1711 - 2934 (+)
Gene ID: HRGMv2_4308_62_4
Type: pfam
Location: 3319 - 4152 (+)
Type: pfam
Location: 3319 - 4152 (+)
Gene ID: HRGMv2_4308_62_5
Type: TC
Location: 4407 - 6308 (+)
Type: TC
Location: 4407 - 6308 (+)
Gene ID: HRGMv2_4308_62_6
Type: CAZyme
Location: 6345 - 7775 (+)
Type: CAZyme
Location: 6345 - 7775 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Brotaphodocola
Species
Brotaphodocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.