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Cluster: HRGMv2_4308_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4308_1 HRGMv2_4308_1_72 73946 75865 - CBM48 | GH13_9
CAZyme HRGMv2_4308_1 HRGMv2_4308_1_73 75870 77207 - GH13_20
pfam HRGMv2_4308_1 HRGMv2_4308_1_74 77232 77486 - DUF2508
TF HRGMv2_4308_1 HRGMv2_4308_1_75 77667 77999 - HTH_5
TC HRGMv2_4308_1 HRGMv2_4308_1_76 78175 78519 - 4.A.1.1.7
pfam HRGMv2_4308_1 HRGMv2_4308_1_77 79031 79498 + Peptidase_A24
NULL(UNKNOWN) HRGMv2_4308_1 HRGMv2_4308_1_78 79540 80634 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4308_1 HRGMv2_4308_1_79 80631 81971 + 3.A.7.15.1
Gene ID: HRGMv2_4308_1_72
Type: CAZyme
Location: 73946 - 75865 (-)
Gene ID: HRGMv2_4308_1_73
Type: CAZyme
Location: 75870 - 77207 (-)
Gene ID: HRGMv2_4308_1_74
Type: pfam
Location: 77232 - 77486 (-)
Gene ID: HRGMv2_4308_1_75
Type: TF
Location: 77667 - 77999 (-)
Gene ID: HRGMv2_4308_1_76
Type: TC
Location: 78175 - 78519 (-)
Gene ID: HRGMv2_4308_1_77
Type: pfam
Location: 79031 - 79498 (+)
Gene ID: HRGMv2_4308_1_78
Type:
Location: 79540 - 80634 (+)
Gene ID: HRGMv2_4308_1_79
Type: TC
Location: 80631 - 81971 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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