Cluster: HRGMv2_4308_CGC20
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4308
- CGC Family ID: CGCFAM_00563
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4308_24 | HRGMv2_4308_24_2 | 2262 | 3242 | + | GT2 |
| TC | HRGMv2_4308_24 | HRGMv2_4308_24_3 | 3321 | 4784 | + | 2.A.66.2.23 |
| pfam | HRGMv2_4308_24 | HRGMv2_4308_24_4 | 4781 | 5839 | + | ATP-grasp_3 | CPSase_L_D2 | ATPgrasp_Ter |
| pfam | HRGMv2_4308_24 | HRGMv2_4308_24_5 | 5836 | 6948 | + | DegT_DnrJ_EryC1 |
| CAZyme | HRGMv2_4308_24 | HRGMv2_4308_24_6 | 6983 | 7672 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_4308_24 | HRGMv2_4308_24_7 | 7835 | 9124 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4308_24 | HRGMv2_4308_24_8 | 9124 | 10068 | + | GT2 |
Gene ID: HRGMv2_4308_24_2
Type: CAZyme
Location: 2262 - 3242 (+)
Type: CAZyme
Location: 2262 - 3242 (+)
Gene ID: HRGMv2_4308_24_3
Type: TC
Location: 3321 - 4784 (+)
Type: TC
Location: 3321 - 4784 (+)
Gene ID: HRGMv2_4308_24_4
Type: pfam
Location: 4781 - 5839 (+)
Type: pfam
Location: 4781 - 5839 (+)
Gene ID: HRGMv2_4308_24_5
Type: pfam
Location: 5836 - 6948 (+)
Type: pfam
Location: 5836 - 6948 (+)
Gene ID: HRGMv2_4308_24_6
Type: CAZyme
Location: 6983 - 7672 (+)
Type: CAZyme
Location: 6983 - 7672 (+)
Gene ID: HRGMv2_4308_24_7
Type:
Location: 7835 - 9124 (+)
Type:
Location: 7835 - 9124 (+)
Gene ID: HRGMv2_4308_24_8
Type: CAZyme
Location: 9124 - 10068 (+)
Type: CAZyme
Location: 9124 - 10068 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Brotaphodocola
Species
Brotaphodocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.