Cluster: HRGMv2_4308_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4308
- CGC Family ID: CGCFAM_03087
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4308_2 | HRGMv2_4308_2_11 | 9303 | 10826 | + | 2.A.80.1.1 |
| CAZyme | HRGMv2_4308_2 | HRGMv2_4308_2_12 | 10816 | 11919 | + | CE19 |
| CAZyme | HRGMv2_4308_2 | HRGMv2_4308_2_13 | 11932 | 14022 | + | GH28 |
| CAZyme | HRGMv2_4308_2 | HRGMv2_4308_2_14 | 14058 | 15176 | + | GH105 |
| pfam | HRGMv2_4308_2 | HRGMv2_4308_2_15 | 15173 | 16018 | + | AP_endonuc_2 |
| TC | HRGMv2_4308_2 | HRGMv2_4308_2_16 | 16158 | 17708 | - | 2.A.15.2.3 |
Gene ID: HRGMv2_4308_2_11
Type: TC
Location: 9303 - 10826 (+)
Type: TC
Location: 9303 - 10826 (+)
Gene ID: HRGMv2_4308_2_12
Type: CAZyme
Location: 10816 - 11919 (+)
Type: CAZyme
Location: 10816 - 11919 (+)
Gene ID: HRGMv2_4308_2_13
Type: CAZyme
Location: 11932 - 14022 (+)
Type: CAZyme
Location: 11932 - 14022 (+)
Gene ID: HRGMv2_4308_2_14
Type: CAZyme
Location: 14058 - 15176 (+)
Type: CAZyme
Location: 14058 - 15176 (+)
Gene ID: HRGMv2_4308_2_15
Type: pfam
Location: 15173 - 16018 (+)
Type: pfam
Location: 15173 - 16018 (+)
Gene ID: HRGMv2_4308_2_16
Type: TC
Location: 16158 - 17708 (-)
Type: TC
Location: 16158 - 17708 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Brotaphodocola
Species
Brotaphodocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.