Cluster: HRGMv2_4308_CGC30
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4308
- CGC Family ID: CGCFAM_00452
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4308_41 | HRGMv2_4308_41_12 | 15344 | 16768 | + | GH4 |
| TC | HRGMv2_4308_41 | HRGMv2_4308_41_13 | 16769 | 18346 | + | 4.A.1.1.3 |
| NULL(UNKNOWN) | HRGMv2_4308_41 | HRGMv2_4308_41_14 | 18437 | 20767 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_4308_41 | HRGMv2_4308_41_15 | 20954 | 21430 | + | HTH_3 |
| TC | HRGMv2_4308_41 | HRGMv2_4308_41_16 | 21738 | 23273 | + | 9.A.11.1.1 |
Gene ID: HRGMv2_4308_41_12
Type: CAZyme
Location: 15344 - 16768 (+)
Type: CAZyme
Location: 15344 - 16768 (+)
Gene ID: HRGMv2_4308_41_13
Type: TC
Location: 16769 - 18346 (+)
Type: TC
Location: 16769 - 18346 (+)
Gene ID: HRGMv2_4308_41_14
Type:
Location: 18437 - 20767 (-)
Type:
Location: 18437 - 20767 (-)
Gene ID: HRGMv2_4308_41_15
Type: TF
Location: 20954 - 21430 (+)
Type: TF
Location: 20954 - 21430 (+)
Gene ID: HRGMv2_4308_41_16
Type: TC
Location: 21738 - 23273 (+)
Type: TC
Location: 21738 - 23273 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Brotaphodocola
Species
Brotaphodocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.