Cluster: HRGMv2_4308_CGC50
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4308
- CGC Family ID: CGCFAM_00277
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4308_136 | HRGMv2_4308_136_1 | 3 | 1580 | - | GH2 |
| TC | HRGMv2_4308_136 | HRGMv2_4308_136_2 | 1619 | 2452 | - | 3.A.1.1.18 |
| TC | HRGMv2_4308_136 | HRGMv2_4308_136_3 | 2449 | 3342 | - | 3.A.1.1.11 |
| STP | HRGMv2_4308_136 | HRGMv2_4308_136_4 | 3424 | 4794 | - | SBP_bac_1 |
| TF | HRGMv2_4308_136 | HRGMv2_4308_136_5 | 4900 | 6642 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4308_136 | HRGMv2_4308_136_6 | 6620 | 8419 | - | 8.A.59.2.1 |
Gene ID: HRGMv2_4308_136_1
Type: CAZyme
Location: 3 - 1580 (-)
Type: CAZyme
Location: 3 - 1580 (-)
Gene ID: HRGMv2_4308_136_2
Type: TC
Location: 1619 - 2452 (-)
Type: TC
Location: 1619 - 2452 (-)
Gene ID: HRGMv2_4308_136_3
Type: TC
Location: 2449 - 3342 (-)
Type: TC
Location: 2449 - 3342 (-)
Gene ID: HRGMv2_4308_136_4
Type: STP
Location: 3424 - 4794 (-)
Type: STP
Location: 3424 - 4794 (-)
Gene ID: HRGMv2_4308_136_5
Type: TF
Location: 4900 - 6642 (-)
Type: TF
Location: 4900 - 6642 (-)
Gene ID: HRGMv2_4308_136_6
Type: TC
Location: 6620 - 8419 (-)
Type: TC
Location: 6620 - 8419 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Brotaphodocola
Species
Brotaphodocola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.