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Genome Details

Selected Rep_genome_ID: HRGMv2_2438
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Mediterraneibacter
→
Species
Mediterraneibacter intestinigallinarum
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
HRGMv2_2438 3,359,751 96.53% 0.584% Japan Asia HRGM
Rep_2028 3,542,236 98.3431% 2.33918% NA NA WIS
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_2438_CGC12 CGCFAM_00007 Yes 6 2
HRGMv2_2438_CGC40 CGCFAM_00045 Yes 7 2 alpha-glucan
HRGMv2_2438_CGC24 CGCFAM_00091 Yes 7 3
HRGMv2_2438_CGC13 CGCFAM_00098 Yes 7 4
HRGMv2_2438_CGC27 CGCFAM_00130 Yes 3 2
HRGMv2_2438_CGC33 CGCFAM_00374 Yes 6 4
HRGMv2_2438_CGC22 CGCFAM_00381 Yes 5 1
HRGMv2_2438_CGC16 CGCFAM_00419 Yes 7 4
HRGMv2_2438_CGC5 CGCFAM_00477 Yes 9 2
HRGMv2_2438_CGC35 CGCFAM_00618 Yes 5 3
HRGMv2_2438_CGC39 CGCFAM_00814 Yes 5 1
HRGMv2_2438_CGC37 CGCFAM_00817 Yes 9 2
HRGMv2_2438_CGC19 CGCFAM_00973 Yes 6 1
HRGMv2_2438_CGC21 CGCFAM_01243 Yes 6 1
HRGMv2_2438_CGC34 CGCFAM_01528 Yes 17 10
HRGMv2_2438_CGC26 CGCFAM_03751 Yes 8 2
HRGMv2_2438_CGC1 CGCFAM_04042 Yes 5 1
HRGMv2_2438_CGC38 CGCFAM_04875 Yes 4 1
HRGMv2_2438_CGC20 CGCFAM_04926 Yes 4 1
HRGMv2_2438_CGC41 CGCFAM_06092 Yes 4 1
HRGMv2_2438_CGC31 CGCFAM_06120 Yes 4 1
HRGMv2_2438_CGC23 CGCFAM_06125 Yes 6 1
HRGMv2_2438_CGC7 CGCFAM_08304 Yes 13 1
HRGMv2_2438_CGC3 CGCFAM_10078 Yes 8 2
Top CAZyme Families