Cluster: HRGMv2_2438_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2438
- CGC Family ID: CGCFAM_00419
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2438_22 | HRGMv2_2438_22_6 | 7501 | 9912 | - | GH94 |
| CAZyme | HRGMv2_2438_22 | HRGMv2_2438_22_7 | 9940 | 12639 | - | GH94 |
| NULL(UNKNOWN) | HRGMv2_2438_22 | HRGMv2_2438_22_8 | 12890 | 14278 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2438_22 | HRGMv2_2438_22_9 | 14349 | 15302 | + | 3.A.1.1.4 |
| TC | HRGMv2_2438_22 | HRGMv2_2438_22_10 | 15306 | 16151 | + | 3.A.1.1.20 |
| CAZyme | HRGMv2_2438_22 | HRGMv2_2438_22_11 | 16263 | 18710 | + | GH3 |
| CAZyme | HRGMv2_2438_22 | HRGMv2_2438_22_12 | 18723 | 22196 | + | CBM4 | CBM4 | CBM4 | GH16_3 |
Gene ID: HRGMv2_2438_22_6
Type: CAZyme
Location: 7501 - 9912 (-)
Type: CAZyme
Location: 7501 - 9912 (-)
Gene ID: HRGMv2_2438_22_7
Type: CAZyme
Location: 9940 - 12639 (-)
Type: CAZyme
Location: 9940 - 12639 (-)
Gene ID: HRGMv2_2438_22_8
Type:
Location: 12890 - 14278 (+)
Type:
Location: 12890 - 14278 (+)
Gene ID: HRGMv2_2438_22_9
Type: TC
Location: 14349 - 15302 (+)
Type: TC
Location: 14349 - 15302 (+)
Gene ID: HRGMv2_2438_22_10
Type: TC
Location: 15306 - 16151 (+)
Type: TC
Location: 15306 - 16151 (+)
Gene ID: HRGMv2_2438_22_11
Type: CAZyme
Location: 16263 - 18710 (+)
Type: CAZyme
Location: 16263 - 18710 (+)
Gene ID: HRGMv2_2438_22_12
Type: CAZyme
Location: 18723 - 22196 (+)
Type: CAZyme
Location: 18723 - 22196 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2438_22_8 | vegan > omnivore | 2.32103 | 0.02164 |