Cluster: HRGMv2_2438_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2438
- CGC Family ID: CGCFAM_04042
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2438_1 | HRGMv2_2438_1_35 | 38164 | 39156 | + | 8.A.5.1.4 |
| TF | HRGMv2_2438_1 | HRGMv2_2438_1_36 | 39241 | 40098 | + | HTH_DeoR |
| TC | HRGMv2_2438_1 | HRGMv2_2438_1_37 | 40495 | 41856 | + | 2.A.23.1.2 |
| pfam | HRGMv2_2438_1 | HRGMv2_2438_1_38 | 41882 | 42643 | + | adh_short | KR | adh_short_C2 |
| CAZyme | HRGMv2_2438_1 | HRGMv2_2438_1_39 | 42724 | 45399 | - | GT51 |
Gene ID: HRGMv2_2438_1_35
Type: TC
Location: 38164 - 39156 (+)
Type: TC
Location: 38164 - 39156 (+)
Gene ID: HRGMv2_2438_1_36
Type: TF
Location: 39241 - 40098 (+)
Type: TF
Location: 39241 - 40098 (+)
Gene ID: HRGMv2_2438_1_37
Type: TC
Location: 40495 - 41856 (+)
Type: TC
Location: 40495 - 41856 (+)
Gene ID: HRGMv2_2438_1_38
Type: pfam
Location: 41882 - 42643 (+)
Type: pfam
Location: 41882 - 42643 (+)
Gene ID: HRGMv2_2438_1_39
Type: CAZyme
Location: 42724 - 45399 (-)
Type: CAZyme
Location: 42724 - 45399 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.