Cluster: HRGMv2_2438_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2438
- CGC Family ID: CGCFAM_00007
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2438_16 | HRGMv2_2438_16_17 | 20498 | 21259 | - | 3.A.1.103.1 |
| TC | HRGMv2_2438_16 | HRGMv2_2438_16_18 | 21267 | 22070 | - | 3.A.1.103.2 |
| NULL(UNKNOWN) | HRGMv2_2438_16 | HRGMv2_2438_16_19 | 22082 | 22459 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2438_16 | HRGMv2_2438_16_20 | 22425 | 24575 | - | GT4 | GT4 |
| pfam | HRGMv2_2438_16 | HRGMv2_2438_16_21 | 24572 | 25801 | - | UDPG_MGDP_dh | NAD_binding_2 | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | HRGMv2_2438_16 | HRGMv2_2438_16_22 | 25777 | 26529 | - | GT26 |
Gene ID: HRGMv2_2438_16_17
Type: TC
Location: 20498 - 21259 (-)
Type: TC
Location: 20498 - 21259 (-)
Gene ID: HRGMv2_2438_16_18
Type: TC
Location: 21267 - 22070 (-)
Type: TC
Location: 21267 - 22070 (-)
Gene ID: HRGMv2_2438_16_19
Type:
Location: 22082 - 22459 (-)
Type:
Location: 22082 - 22459 (-)
Gene ID: HRGMv2_2438_16_20
Type: CAZyme
Location: 22425 - 24575 (-)
Type: CAZyme
Location: 22425 - 24575 (-)
Gene ID: HRGMv2_2438_16_21
Type: pfam
Location: 24572 - 25801 (-)
Type: pfam
Location: 24572 - 25801 (-)
Gene ID: HRGMv2_2438_16_22
Type: CAZyme
Location: 25777 - 26529 (-)
Type: CAZyme
Location: 25777 - 26529 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.