Cluster: HRGMv2_2438_CGC39
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2438
- CGC Family ID: CGCFAM_00814
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2438_62 | HRGMv2_2438_62_17 | 14401 | 15450 | - | GT2 |
| pfam | HRGMv2_2438_62 | HRGMv2_2438_62_18 | 15447 | 16376 | - | Transket_pyr | Transketolase_C |
| pfam | HRGMv2_2438_62 | HRGMv2_2438_62_19 | 16392 | 17390 | - | Transketolase_N | E1_dh | XFP_N | DXP_synthase_N |
| TC | HRGMv2_2438_62 | HRGMv2_2438_62_20 | 17413 | 18351 | - | 8.A.5.1.4 |
| TC | HRGMv2_2438_62 | HRGMv2_2438_62_21 | 18363 | 19100 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_2438_62_17
Type: CAZyme
Location: 14401 - 15450 (-)
Type: CAZyme
Location: 14401 - 15450 (-)
Gene ID: HRGMv2_2438_62_18
Type: pfam
Location: 15447 - 16376 (-)
Type: pfam
Location: 15447 - 16376 (-)
Gene ID: HRGMv2_2438_62_19
Type: pfam
Location: 16392 - 17390 (-)
Type: pfam
Location: 16392 - 17390 (-)
Gene ID: HRGMv2_2438_62_20
Type: TC
Location: 17413 - 18351 (-)
Type: TC
Location: 17413 - 18351 (-)
Gene ID: HRGMv2_2438_62_21
Type: TC
Location: 18363 - 19100 (-)
Type: TC
Location: 18363 - 19100 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.