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Cluster: HRGMv2_2438_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2438_2 HRGMv2_2438_2_49 42715 43470 - 3.A.1.124.3
TF HRGMv2_2438_2 HRGMv2_2438_2_50 43702 44406 + Trans_reg_C
STP HRGMv2_2438_2 HRGMv2_2438_2_51 44413 45834 + HATPase_c | HisKA
TC HRGMv2_2438_2 HRGMv2_2438_2_52 46118 47062 + 2.A.69.3.2
pfam HRGMv2_2438_2 HRGMv2_2438_2_53 47121 47741 - Hexapep | Mac | Hexapep_2
CAZyme HRGMv2_2438_2 HRGMv2_2438_2_54 47812 49836 - GH31_1
CAZyme HRGMv2_2438_2 HRGMv2_2438_2_55 50246 51442 + GH2
TC HRGMv2_2438_2 HRGMv2_2438_2_56 51698 52159 - 9.A.11.1.1
Gene ID: HRGMv2_2438_2_49
Type: TC
Location: 42715 - 43470 (-)
Gene ID: HRGMv2_2438_2_50
Type: TF
Location: 43702 - 44406 (+)
Gene ID: HRGMv2_2438_2_51
Type: STP
Location: 44413 - 45834 (+)
Gene ID: HRGMv2_2438_2_52
Type: TC
Location: 46118 - 47062 (+)
Gene ID: HRGMv2_2438_2_53
Type: pfam
Location: 47121 - 47741 (-)
Gene ID: HRGMv2_2438_2_54
Type: CAZyme
Location: 47812 - 49836 (-)
Gene ID: HRGMv2_2438_2_55
Type: CAZyme
Location: 50246 - 51442 (+)
Gene ID: HRGMv2_2438_2_56
Type: TC
Location: 51698 - 52159 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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