Cluster: HRGMv2_2438_CGC24
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2438
- CGC Family ID: CGCFAM_00091
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2438_41 | HRGMv2_2438_41_56 | 53747 | 55126 | + | 9.B.18.1.3 |
| CAZyme | HRGMv2_2438_41 | HRGMv2_2438_41_57 | 55167 | 56000 | + | GT2 |
| pfam | HRGMv2_2438_41 | HRGMv2_2438_41_58 | 56009 | 57058 | + | Glycos_transf_1 | Glyco_trans_1_4 |
| CAZyme | HRGMv2_2438_41 | HRGMv2_2438_41_59 | 57083 | 57955 | + | GT11 |
| CAZyme | HRGMv2_2438_41 | HRGMv2_2438_41_60 | 57968 | 59107 | + | GT4 |
| pfam | HRGMv2_2438_41 | HRGMv2_2438_41_61 | 59145 | 60281 | + | Wzy_C |
| TC | HRGMv2_2438_41 | HRGMv2_2438_41_62 | 60259 | 61788 | + | 2.A.66.4.5 |
Gene ID: HRGMv2_2438_41_56
Type: TC
Location: 53747 - 55126 (+)
Type: TC
Location: 53747 - 55126 (+)
Gene ID: HRGMv2_2438_41_57
Type: CAZyme
Location: 55167 - 56000 (+)
Type: CAZyme
Location: 55167 - 56000 (+)
Gene ID: HRGMv2_2438_41_58
Type: pfam
Location: 56009 - 57058 (+)
Type: pfam
Location: 56009 - 57058 (+)
Gene ID: HRGMv2_2438_41_59
Type: CAZyme
Location: 57083 - 57955 (+)
Type: CAZyme
Location: 57083 - 57955 (+)
Gene ID: HRGMv2_2438_41_60
Type: CAZyme
Location: 57968 - 59107 (+)
Type: CAZyme
Location: 57968 - 59107 (+)
Gene ID: HRGMv2_2438_41_61
Type: pfam
Location: 59145 - 60281 (+)
Type: pfam
Location: 59145 - 60281 (+)
Gene ID: HRGMv2_2438_41_62
Type: TC
Location: 60259 - 61788 (+)
Type: TC
Location: 60259 - 61788 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.