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Cluster: HRGMv2_2438_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2438_43 HRGMv2_2438_43_1 3 1109 + 9.B.33.1.1
TF HRGMv2_2438_43 HRGMv2_2438_43_2 1114 2736 + HTH_AraC
TC HRGMv2_2438_43 HRGMv2_2438_43_3 2834 4495 + 3.A.1.1.29
TC HRGMv2_2438_43 HRGMv2_2438_43_4 4564 5520 + 3.A.1.1.29
TC HRGMv2_2438_43 HRGMv2_2438_43_5 5533 6429 + 3.A.1.1.29
CAZyme HRGMv2_2438_43 HRGMv2_2438_43_6 6451 8553 + GH3
TC HRGMv2_2438_43 HRGMv2_2438_43_7 8579 9214 + 9.B.28.1.2
CAZyme HRGMv2_2438_43 HRGMv2_2438_43_8 9207 10709 + GH51_1
Gene ID: HRGMv2_2438_43_1
Type: TC
Location: 3 - 1109 (+)
Gene ID: HRGMv2_2438_43_2
Type: TF
Location: 1114 - 2736 (+)
Gene ID: HRGMv2_2438_43_3
Type: TC
Location: 2834 - 4495 (+)
Gene ID: HRGMv2_2438_43_4
Type: TC
Location: 4564 - 5520 (+)
Gene ID: HRGMv2_2438_43_5
Type: TC
Location: 5533 - 6429 (+)
Gene ID: HRGMv2_2438_43_6
Type: CAZyme
Location: 6451 - 8553 (+)
Gene ID: HRGMv2_2438_43_7
Type: TC
Location: 8579 - 9214 (+)
Gene ID: HRGMv2_2438_43_8
Type: CAZyme
Location: 9207 - 10709 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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