Cluster: HRGMv2_2438_CGC7
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2438
- CGC Family ID: CGCFAM_08304
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2438_10 | HRGMv2_2438_10_10 | 6187 | 8274 | + | 3.A.3.32.3 |
| pfam | HRGMv2_2438_10 | HRGMv2_2438_10_11 | 8354 | 9001 | - | ABC2_membrane_5 |
| TC | HRGMv2_2438_10 | HRGMv2_2438_10_12 | 8998 | 9861 | - | 3.A.1.149.1 |
| TF | HRGMv2_2438_10 | HRGMv2_2438_10_13 | 9918 | 10292 | - | GntR |
| pfam | HRGMv2_2438_10 | HRGMv2_2438_10_14 | 10297 | 11100 | - | ABC2_membrane_3 |
| TC | HRGMv2_2438_10 | HRGMv2_2438_10_15 | 11097 | 11948 | - | 3.A.1.144.1 |
| pfam | HRGMv2_2438_10 | HRGMv2_2438_10_16 | 12216 | 12794 | - | DUF4854 |
| pfam | HRGMv2_2438_10 | HRGMv2_2438_10_17 | 12968 | 14098 | + | Radical_SAM | Fer4_12 |
| CAZyme | HRGMv2_2438_10 | HRGMv2_2438_10_18 | 14250 | 16412 | + | GH112 |
| TF | HRGMv2_2438_10 | HRGMv2_2438_10_19 | 16414 | 17244 | - | HTH_AraC |
| STP | HRGMv2_2438_10 | HRGMv2_2438_10_20 | 17488 | 18870 | + | SBP_bac_1 |
| TC | HRGMv2_2438_10 | HRGMv2_2438_10_21 | 18959 | 19849 | + | 3.A.1.1.7 |
| TC | HRGMv2_2438_10 | HRGMv2_2438_10_22 | 19868 | 20740 | + | 3.A.1.1.18 |
Gene ID: HRGMv2_2438_10_10
Type: TC
Location: 6187 - 8274 (+)
Type: TC
Location: 6187 - 8274 (+)
Gene ID: HRGMv2_2438_10_11
Type: pfam
Location: 8354 - 9001 (-)
Type: pfam
Location: 8354 - 9001 (-)
Gene ID: HRGMv2_2438_10_12
Type: TC
Location: 8998 - 9861 (-)
Type: TC
Location: 8998 - 9861 (-)
Gene ID: HRGMv2_2438_10_13
Type: TF
Location: 9918 - 10292 (-)
Type: TF
Location: 9918 - 10292 (-)
Gene ID: HRGMv2_2438_10_14
Type: pfam
Location: 10297 - 11100 (-)
Type: pfam
Location: 10297 - 11100 (-)
Gene ID: HRGMv2_2438_10_15
Type: TC
Location: 11097 - 11948 (-)
Type: TC
Location: 11097 - 11948 (-)
Gene ID: HRGMv2_2438_10_16
Type: pfam
Location: 12216 - 12794 (-)
Type: pfam
Location: 12216 - 12794 (-)
Gene ID: HRGMv2_2438_10_17
Type: pfam
Location: 12968 - 14098 (+)
Type: pfam
Location: 12968 - 14098 (+)
Gene ID: HRGMv2_2438_10_18
Type: CAZyme
Location: 14250 - 16412 (+)
Type: CAZyme
Location: 14250 - 16412 (+)
Gene ID: HRGMv2_2438_10_19
Type: TF
Location: 16414 - 17244 (-)
Type: TF
Location: 16414 - 17244 (-)
Gene ID: HRGMv2_2438_10_20
Type: STP
Location: 17488 - 18870 (+)
Type: STP
Location: 17488 - 18870 (+)
Gene ID: HRGMv2_2438_10_21
Type: TC
Location: 18959 - 19849 (+)
Type: TC
Location: 18959 - 19849 (+)
Gene ID: HRGMv2_2438_10_22
Type: TC
Location: 19868 - 20740 (+)
Type: TC
Location: 19868 - 20740 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.