Cluster: HRGMv2_2438_CGC34
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 10
- Substrate:
- Genome ID: HRGMv2_2438
- CGC Family ID: CGCFAM_01528
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2438_54 | HRGMv2_2438_54_20 | 22445 | 23395 | - | GT2 |
| CAZyme | HRGMv2_2438_54 | HRGMv2_2438_54_21 | 23392 | 24438 | - | GT113 |
| pfam | HRGMv2_2438_54 | HRGMv2_2438_54_22 | 24453 | 25595 | - | PS_pyruv_trans |
| CAZyme | HRGMv2_2438_54 | HRGMv2_2438_54_23 | 25610 | 26581 | - | GT2 |
| CAZyme | HRGMv2_2438_54 | HRGMv2_2438_54_24 | 26586 | 27584 | - | GT2 |
| CAZyme | HRGMv2_2438_54 | HRGMv2_2438_54_25 | 27588 | 28787 | - | GT4 |
| pfam | HRGMv2_2438_54 | HRGMv2_2438_54_26 | 28826 | 29839 | - | Acyl_transf_3 |
| CAZyme | HRGMv2_2438_54 | HRGMv2_2438_54_27 | 29853 | 30560 | - | GT32 |
| CAZyme | HRGMv2_2438_54 | HRGMv2_2438_54_28 | 30550 | 31449 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_2438_54 | HRGMv2_2438_54_29 | 31478 | 32278 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2438_54 | HRGMv2_2438_54_30 | 32288 | 32557 | - | GT2 |
| CAZyme | HRGMv2_2438_54 | HRGMv2_2438_54_31 | 32547 | 33671 | - | GT4 |
| pfam | HRGMv2_2438_54 | HRGMv2_2438_54_32 | 33694 | 34791 | - | EpsG |
| CAZyme | HRGMv2_2438_54 | HRGMv2_2438_54_33 | 34844 | 35962 | - | GT4 |
| TC | HRGMv2_2438_54 | HRGMv2_2438_54_34 | 35949 | 36602 | - | 9.B.18.1.1 |
| TC | HRGMv2_2438_54 | HRGMv2_2438_54_35 | 36608 | 38182 | - | 8.A.3.3.4 |
| TC | HRGMv2_2438_54 | HRGMv2_2438_54_36 | 38163 | 39575 | - | 8.A.3.1.2 |
Gene ID: HRGMv2_2438_54_20
Type: CAZyme
Location: 22445 - 23395 (-)
Type: CAZyme
Location: 22445 - 23395 (-)
Gene ID: HRGMv2_2438_54_21
Type: CAZyme
Location: 23392 - 24438 (-)
Type: CAZyme
Location: 23392 - 24438 (-)
Gene ID: HRGMv2_2438_54_22
Type: pfam
Location: 24453 - 25595 (-)
Type: pfam
Location: 24453 - 25595 (-)
Gene ID: HRGMv2_2438_54_23
Type: CAZyme
Location: 25610 - 26581 (-)
Type: CAZyme
Location: 25610 - 26581 (-)
Gene ID: HRGMv2_2438_54_24
Type: CAZyme
Location: 26586 - 27584 (-)
Type: CAZyme
Location: 26586 - 27584 (-)
Gene ID: HRGMv2_2438_54_25
Type: CAZyme
Location: 27588 - 28787 (-)
Type: CAZyme
Location: 27588 - 28787 (-)
Gene ID: HRGMv2_2438_54_26
Type: pfam
Location: 28826 - 29839 (-)
Type: pfam
Location: 28826 - 29839 (-)
Gene ID: HRGMv2_2438_54_27
Type: CAZyme
Location: 29853 - 30560 (-)
Type: CAZyme
Location: 29853 - 30560 (-)
Gene ID: HRGMv2_2438_54_28
Type: CAZyme
Location: 30550 - 31449 (-)
Type: CAZyme
Location: 30550 - 31449 (-)
Gene ID: HRGMv2_2438_54_29
Type:
Location: 31478 - 32278 (-)
Type:
Location: 31478 - 32278 (-)
Gene ID: HRGMv2_2438_54_30
Type: CAZyme
Location: 32288 - 32557 (-)
Type: CAZyme
Location: 32288 - 32557 (-)
Gene ID: HRGMv2_2438_54_31
Type: CAZyme
Location: 32547 - 33671 (-)
Type: CAZyme
Location: 32547 - 33671 (-)
Gene ID: HRGMv2_2438_54_32
Type: pfam
Location: 33694 - 34791 (-)
Type: pfam
Location: 33694 - 34791 (-)
Gene ID: HRGMv2_2438_54_33
Type: CAZyme
Location: 34844 - 35962 (-)
Type: CAZyme
Location: 34844 - 35962 (-)
Gene ID: HRGMv2_2438_54_34
Type: TC
Location: 35949 - 36602 (-)
Type: TC
Location: 35949 - 36602 (-)
Gene ID: HRGMv2_2438_54_35
Type: TC
Location: 36608 - 38182 (-)
Type: TC
Location: 36608 - 38182 (-)
Gene ID: HRGMv2_2438_54_36
Type: TC
Location: 38163 - 39575 (-)
Type: TC
Location: 38163 - 39575 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.