Cluster: HRGMv2_2438_CGC40
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2438
- CGC Family ID: CGCFAM_00045
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2438_62 | HRGMv2_2438_62_60 | 58313 | 60085 | - | CBM34 | GH13_20 |
| TC | HRGMv2_2438_62 | HRGMv2_2438_62_61 | 60082 | 60930 | - | 3.A.1.1.6 |
| TC | HRGMv2_2438_62 | HRGMv2_2438_62_62 | 60927 | 61811 | - | 3.A.1.1.2 |
| TC | HRGMv2_2438_62 | HRGMv2_2438_62_63 | 61896 | 63146 | - | 3.A.1.1.2 |
| pfam | HRGMv2_2438_62 | HRGMv2_2438_62_64 | 63384 | 63863 | + | LuxS |
| pfam | HRGMv2_2438_62 | HRGMv2_2438_62_65 | 63963 | 64499 | - | DUF5662 |
| CAZyme | HRGMv2_2438_62 | HRGMv2_2438_62_66 | 64496 | 66271 | - | GH13_11 |
Gene ID: HRGMv2_2438_62_60
Type: CAZyme
Location: 58313 - 60085 (-)
Type: CAZyme
Location: 58313 - 60085 (-)
Gene ID: HRGMv2_2438_62_61
Type: TC
Location: 60082 - 60930 (-)
Type: TC
Location: 60082 - 60930 (-)
Gene ID: HRGMv2_2438_62_62
Type: TC
Location: 60927 - 61811 (-)
Type: TC
Location: 60927 - 61811 (-)
Gene ID: HRGMv2_2438_62_63
Type: TC
Location: 61896 - 63146 (-)
Type: TC
Location: 61896 - 63146 (-)
Gene ID: HRGMv2_2438_62_64
Type: pfam
Location: 63384 - 63863 (+)
Type: pfam
Location: 63384 - 63863 (+)
Gene ID: HRGMv2_2438_62_65
Type: pfam
Location: 63963 - 64499 (-)
Type: pfam
Location: 63963 - 64499 (-)
Gene ID: HRGMv2_2438_62_66
Type: CAZyme
Location: 64496 - 66271 (-)
Type: CAZyme
Location: 64496 - 66271 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.