Cluster: HRGMv2_2438_CGC22
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2438
- CGC Family ID: CGCFAM_00381
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2438_40 | HRGMv2_2438_40_20 | 15999 | 17369 | + | 2.A.66.1.7 |
| NULL(UNKNOWN) | HRGMv2_2438_40 | HRGMv2_2438_40_21 | 17389 | 19161 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2438_40 | HRGMv2_2438_40_22 | 19186 | 21096 | - | GT2 |
| pfam | HRGMv2_2438_40 | HRGMv2_2438_40_23 | 21074 | 22174 | - | Glycos_transf_2 | GtrA_DPMS_TM |
| TC | HRGMv2_2438_40 | HRGMv2_2438_40_24 | 22213 | 23904 | - | 9.B.34.1.4 |
Gene ID: HRGMv2_2438_40_20
Type: TC
Location: 15999 - 17369 (+)
Type: TC
Location: 15999 - 17369 (+)
Gene ID: HRGMv2_2438_40_21
Type:
Location: 17389 - 19161 (-)
Type:
Location: 17389 - 19161 (-)
Gene ID: HRGMv2_2438_40_22
Type: CAZyme
Location: 19186 - 21096 (-)
Type: CAZyme
Location: 19186 - 21096 (-)
Gene ID: HRGMv2_2438_40_23
Type: pfam
Location: 21074 - 22174 (-)
Type: pfam
Location: 21074 - 22174 (-)
Gene ID: HRGMv2_2438_40_24
Type: TC
Location: 22213 - 23904 (-)
Type: TC
Location: 22213 - 23904 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.