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Genome Details

Selected Rep_genome_ID: A49.bin_13
Total Genomes Found: 35
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Gemmiger
→
Species
Gemmiger formicilis
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
A49.bin_13 3,252,510 97.96% 0% China(Inner Mongolia) Asia IMGG
CGMR090359 2,468,957 97.28% 0.02% China Asia CGMR
HRGMv2_2724 3,532,120 97.27% 0% South Korea Asia HRGM
Rep_3056 3,568,790 97.2789% 0.680272% NA NA WIS
SPMP06_bin.100 3,097,127 95.92% 0% Singapore Asia SPMP
SPMP101_bin.25 3,001,325 91.19% 0.68% Singapore Asia SPMP
SPMP102_bin.91 2,544,947 91.33% 1.36% Singapore Asia SPMP
SPMP105_bin.60 2,619,691 93.37% 0.68% Singapore Asia SPMP
SPMP106_bin.7 2,293,081 97.28% 0% Singapore Asia SPMP
SPMP107_bin.12 2,658,005 91.38% 4.9% Singapore Asia SPMP
SPMP12_bin.2 2,651,127 94.56% 0% Singapore Asia SPMP
SPMP16_bin.21 2,651,157 94.9% 0% Singapore Asia SPMP
SPMP18_bin.26 2,834,877 95.92% 0% Singapore Asia SPMP
SPMP19_bin.51 2,273,307 93.2% 0% Singapore Asia SPMP
SPMP20_bin.85 2,392,966 94.05% 1.13% Singapore Asia SPMP
SPMP22_bin.23 2,748,346 95.75% 0% Singapore Asia SPMP
SPMP23_bin.71 2,426,182 92.86% 0.68% Singapore Asia SPMP
SPMP24_bin.52 2,865,621 96.23% 0.68% Singapore Asia SPMP
SPMP25_bin.72 2,446,103 95.58% 2.72% Singapore Asia SPMP
SPMP32_bin.14 2,801,291 93.63% 0.23% Singapore Asia SPMP
SPMP36_bin.60 2,791,759 93.54% 0.68% Singapore Asia SPMP
SPMP38_bin.86 2,818,977 94.9% 0% Singapore Asia SPMP
SPMP41_bin.95 2,236,072 91.91% 0% Singapore Asia SPMP
SPMP43_bin.70 2,743,144 95.01% 1.13% Singapore Asia SPMP
SPMP44_bin.140 2,993,982 97.03% 1.36% Singapore Asia SPMP
SPMP49_bin.11 2,934,526 91.07% 0.85% Singapore Asia SPMP
SPMP57_bin.10 2,532,719 92.86% 1.36% Singapore Asia SPMP
SPMP70_bin.40 2,861,385 92.84% 0.68% Singapore Asia SPMP
SPMP71_bin.98 2,497,362 94.45% 0.02% Singapore Asia SPMP
SPMP80_bin.74 2,664,015 95.75% 0% Singapore Asia SPMP
SPMP81_bin.80 2,738,871 92.86% 2.04% Singapore Asia SPMP
SPMP82_bin.4 2,700,049 93.2% 1.36% Singapore Asia SPMP
SPMP83_bin.103 2,787,917 95.39% 0% Singapore Asia SPMP
SPMP98_bin.64 2,429,472 94.52% 0% Singapore Asia SPMP
SW130_14_sub 3,109,644 97.28% 0% NA Africa H3AfricaPhase2
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
A49.bin_13_CGC2 CGCFAM_00008 Yes 5 2
A49.bin_13_CGC44 CGCFAM_00010 Yes 5 1 alpha-glucan
A49.bin_13_CGC17 CGCFAM_00018 Yes 7 2
A49.bin_13_CGC4 CGCFAM_00038 Yes 5 3
A49.bin_13_CGC18 CGCFAM_00041 Yes 12 3
A49.bin_13_CGC11 CGCFAM_00045 Yes 4 1 alpha-glucan
A49.bin_13_CGC38 CGCFAM_00047 Yes 6 2
A49.bin_13_CGC43 CGCFAM_00054 Yes 6 2
A49.bin_13_CGC23 CGCFAM_00055 Yes 7 4
A49.bin_13_CGC41 CGCFAM_00066 Yes 3 1 beta-mannan
A49.bin_13_CGC15 CGCFAM_00084 Yes 3 1
A49.bin_13_CGC5 CGCFAM_00122 Yes 9 4
A49.bin_13_CGC22 CGCFAM_00271 Yes 3 2
A49.bin_13_CGC39 CGCFAM_00381 Yes 12 8
A49.bin_13_CGC35 CGCFAM_00424 Yes 3 1
A49.bin_13_CGC40 CGCFAM_00446 Yes 7 3 host glycan
A49.bin_13_CGC33 CGCFAM_00451 Yes 4 1
A49.bin_13_CGC25 CGCFAM_00678 Yes 4 1
A49.bin_13_CGC3 CGCFAM_00679 Yes 6 1
A49.bin_13_CGC1 CGCFAM_00763 Yes 4 1
A49.bin_13_CGC36 CGCFAM_00764 Yes 4 1
A49.bin_13_CGC8 CGCFAM_00871 Yes 9 5
A49.bin_13_CGC32 CGCFAM_00950 Yes 3 1
A49.bin_13_CGC29 CGCFAM_00990 Yes 12 6
A49.bin_13_CGC13 CGCFAM_01316 Yes 9 3
Top CAZyme Families