Cluster: A49.bin_13_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: A49.bin_13
- CGC Family ID: CGCFAM_00008
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_140 | A49_contig_140_159 | 183656 | 184453 | + | 3.A.1.103.6 |
| TC | A49_contig_140 | A49_contig_140_160 | 184466 | 185242 | + | 3.A.1.103.1 |
| CAZyme | A49_contig_140 | A49_contig_140_161 | 185246 | 187114 | + | GT2 | GT2 |
| pfam | A49_contig_140 | A49_contig_140_162 | 187114 | 187635 | + | Y1_Tnp |
| CAZyme | A49_contig_140 | A49_contig_140_163 | 187625 | 189463 | + | GT2 | GT2 |
Gene ID: A49_contig_140_159
Type: TC
Location: 183656 - 184453 (+)
Type: TC
Location: 183656 - 184453 (+)
Gene ID: A49_contig_140_160
Type: TC
Location: 184466 - 185242 (+)
Type: TC
Location: 184466 - 185242 (+)
Gene ID: A49_contig_140_161
Type: CAZyme
Location: 185246 - 187114 (+)
Type: CAZyme
Location: 185246 - 187114 (+)
Gene ID: A49_contig_140_162
Type: pfam
Location: 187114 - 187635 (+)
Type: pfam
Location: 187114 - 187635 (+)
Gene ID: A49_contig_140_163
Type: CAZyme
Location: 187625 - 189463 (+)
Type: CAZyme
Location: 187625 - 189463 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.