Cluster: A49.bin_13_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: A49.bin_13
- CGC Family ID: CGCFAM_00038
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_140 | A49_contig_140_280 | 312456 | 313868 | + | 9.B.18.1.1 |
| CAZyme | A49_contig_140 | A49_contig_140_281 | 313902 | 315056 | + | GT4 |
| CAZyme | A49_contig_140 | A49_contig_140_282 | 315053 | 316105 | + | GT4 |
| NULL(UNKNOWN) | A49_contig_140 | A49_contig_140_283 | 316310 | 318712 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A49_contig_140 | A49_contig_140_284 | 318737 | 319672 | + | GT2 |
Gene ID: A49_contig_140_280
Type: TC
Location: 312456 - 313868 (+)
Type: TC
Location: 312456 - 313868 (+)
Gene ID: A49_contig_140_281
Type: CAZyme
Location: 313902 - 315056 (+)
Type: CAZyme
Location: 313902 - 315056 (+)
Gene ID: A49_contig_140_282
Type: CAZyme
Location: 315053 - 316105 (+)
Type: CAZyme
Location: 315053 - 316105 (+)
Gene ID: A49_contig_140_283
Type:
Location: 316310 - 318712 (+)
Type:
Location: 316310 - 318712 (+)
Gene ID: A49_contig_140_284
Type: CAZyme
Location: 318737 - 319672 (+)
Type: CAZyme
Location: 318737 - 319672 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.