Cluster: A49.bin_13_CGC13
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: A49.bin_13
- CGC Family ID: CGCFAM_01316
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_140 | A49_contig_140_719 | 815935 | 816882 | + | 3.A.1.34.1 |
| TC | A49_contig_140 | A49_contig_140_720 | 816875 | 817669 | + | 3.A.1.34.1 |
| pfam | A49_contig_140 | A49_contig_140_721 | 817861 | 819540 | + | Lipase_GDSL | Lipase_GDSL_2 | Flg_new_2 |
| pfam | A49_contig_140 | A49_contig_140_722 | 819559 | 820314 | + | Hydrolase | Hydrolase_like | HAD_2 |
| TC | A49_contig_140 | A49_contig_140_723 | 820384 | 822273 | + | 3.A.1.121.4 |
| CAZyme | A49_contig_140 | A49_contig_140_724 | 822385 | 823155 | + | GT111 |
| CAZyme | A49_contig_140 | A49_contig_140_725 | 823148 | 824041 | + | GT2 |
| pfam | A49_contig_140 | A49_contig_140_726 | 824038 | 825759 | + | Hydrolase |
| CAZyme | A49_contig_140 | A49_contig_140_727 | 825787 | 826806 | + | GT2 |
Gene ID: A49_contig_140_719
Type: TC
Location: 815935 - 816882 (+)
Type: TC
Location: 815935 - 816882 (+)
Gene ID: A49_contig_140_720
Type: TC
Location: 816875 - 817669 (+)
Type: TC
Location: 816875 - 817669 (+)
Gene ID: A49_contig_140_721
Type: pfam
Location: 817861 - 819540 (+)
Type: pfam
Location: 817861 - 819540 (+)
Gene ID: A49_contig_140_722
Type: pfam
Location: 819559 - 820314 (+)
Type: pfam
Location: 819559 - 820314 (+)
Gene ID: A49_contig_140_723
Type: TC
Location: 820384 - 822273 (+)
Type: TC
Location: 820384 - 822273 (+)
Gene ID: A49_contig_140_724
Type: CAZyme
Location: 822385 - 823155 (+)
Type: CAZyme
Location: 822385 - 823155 (+)
Gene ID: A49_contig_140_725
Type: CAZyme
Location: 823148 - 824041 (+)
Type: CAZyme
Location: 823148 - 824041 (+)
Gene ID: A49_contig_140_726
Type: pfam
Location: 824038 - 825759 (+)
Type: pfam
Location: 824038 - 825759 (+)
Gene ID: A49_contig_140_727
Type: CAZyme
Location: 825787 - 826806 (+)
Type: CAZyme
Location: 825787 - 826806 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.