Cluster: A49.bin_13_CGC23
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: A49.bin_13
- CGC Family ID: CGCFAM_00055
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A49_contig_140 | A49_contig_140_1536 | 1754390 | 1755220 | - | GT6 |
| TC | A49_contig_140 | A49_contig_140_1537 | 1755213 | 1756493 | - | 3.A.1.103.5 |
| TC | A49_contig_140 | A49_contig_140_1538 | 1756506 | 1757363 | - | 3.A.1.103.5 |
| CAZyme | A49_contig_140 | A49_contig_140_1539 | 1757376 | 1758344 | - | GT2 |
| CAZyme | A49_contig_140 | A49_contig_140_1540 | 1758491 | 1759465 | - | GT2 |
| pfam | A49_contig_140 | A49_contig_140_1541 | 1759475 | 1760569 | - | ATPgrasp_TupA |
| CAZyme | A49_contig_140 | A49_contig_140_1542 | 1760573 | 1761637 | - | GT2 |
Gene ID: A49_contig_140_1536
Type: CAZyme
Location: 1754390 - 1755220 (-)
Type: CAZyme
Location: 1754390 - 1755220 (-)
Gene ID: A49_contig_140_1537
Type: TC
Location: 1755213 - 1756493 (-)
Type: TC
Location: 1755213 - 1756493 (-)
Gene ID: A49_contig_140_1538
Type: TC
Location: 1756506 - 1757363 (-)
Type: TC
Location: 1756506 - 1757363 (-)
Gene ID: A49_contig_140_1539
Type: CAZyme
Location: 1757376 - 1758344 (-)
Type: CAZyme
Location: 1757376 - 1758344 (-)
Gene ID: A49_contig_140_1540
Type: CAZyme
Location: 1758491 - 1759465 (-)
Type: CAZyme
Location: 1758491 - 1759465 (-)
Gene ID: A49_contig_140_1541
Type: pfam
Location: 1759475 - 1760569 (-)
Type: pfam
Location: 1759475 - 1760569 (-)
Gene ID: A49_contig_140_1542
Type: CAZyme
Location: 1760573 - 1761637 (-)
Type: CAZyme
Location: 1760573 - 1761637 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_140_1536 | vegetarian > omnivore | 1.87873 | 0.00360 |