Cluster: A49.bin_13_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: A49.bin_13
- CGC Family ID: CGCFAM_00045
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A49_contig_140 | A49_contig_140_657 | 739617 | 740843 | + | 3.A.1.1.16 |
| TC | A49_contig_140 | A49_contig_140_658 | 740861 | 741751 | + | 3.A.1.1.44 |
| TC | A49_contig_140 | A49_contig_140_659 | 741755 | 742609 | + | 3.A.1.1.6 |
| CAZyme | A49_contig_140 | A49_contig_140_660 | 742635 | 744362 | + | CBM34 | GH13_20 |
Gene ID: A49_contig_140_657
Type: TC
Location: 739617 - 740843 (+)
Type: TC
Location: 739617 - 740843 (+)
Gene ID: A49_contig_140_658
Type: TC
Location: 740861 - 741751 (+)
Type: TC
Location: 740861 - 741751 (+)
Gene ID: A49_contig_140_659
Type: TC
Location: 741755 - 742609 (+)
Type: TC
Location: 741755 - 742609 (+)
Gene ID: A49_contig_140_660
Type: CAZyme
Location: 742635 - 744362 (+)
Type: CAZyme
Location: 742635 - 744362 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_140_657 | vegan > omnivore | 1.60112 | 0.00699 |
| A49_contig_140_658 | vegan > omnivore | 1.34440 | 0.00699 |
| A49_contig_140_658 | vegetarian > omnivore | 1.14258 | 0.00567 |
| A49_contig_140_659 | vegan > omnivore | 1.66003 | 0.00699 |
| A49_contig_140_659 | vegetarian > omnivore | 1.24270 | 0.00567 |
| A49_contig_140_660 | vegan > omnivore | 1.18863 | 0.00699 |