Cluster: A49.bin_13_CGC8
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 5
- Substrate:
- Genome ID: A49.bin_13
- CGC Family ID: CGCFAM_00871
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A49_contig_140 | A49_contig_140_486 | 563355 | 565967 | + | CBM67 | GH78 |
| pfam | A49_contig_140 | A49_contig_140_487 | 566636 | 567484 | - | AP_endonuc_2 |
| CAZyme | A49_contig_140 | A49_contig_140_488 | 567488 | 569299 | - | CBM32 | GH43_28 |
| CAZyme | A49_contig_140 | A49_contig_140_489 | 569304 | 571493 | - | GH2 |
| pfam | A49_contig_140 | A49_contig_140_490 | 571572 | 573059 | - | MFS_2 |
| CAZyme | A49_contig_140 | A49_contig_140_491 | 573303 | 574604 | + | GH1 |
| TF | A49_contig_140 | A49_contig_140_492 | 574674 | 575873 | + | HTH_AraC | HTH_AraC |
| CAZyme | A49_contig_140 | A49_contig_140_493 | 575929 | 578370 | - | GH3 |
| TC | A49_contig_140 | A49_contig_140_494 | 578974 | 580170 | + | 2.A.37.2.2 |
Gene ID: A49_contig_140_486
Type: CAZyme
Location: 563355 - 565967 (+)
Type: CAZyme
Location: 563355 - 565967 (+)
Gene ID: A49_contig_140_487
Type: pfam
Location: 566636 - 567484 (-)
Type: pfam
Location: 566636 - 567484 (-)
Gene ID: A49_contig_140_488
Type: CAZyme
Location: 567488 - 569299 (-)
Type: CAZyme
Location: 567488 - 569299 (-)
Gene ID: A49_contig_140_489
Type: CAZyme
Location: 569304 - 571493 (-)
Type: CAZyme
Location: 569304 - 571493 (-)
Gene ID: A49_contig_140_490
Type: pfam
Location: 571572 - 573059 (-)
Type: pfam
Location: 571572 - 573059 (-)
Gene ID: A49_contig_140_491
Type: CAZyme
Location: 573303 - 574604 (+)
Type: CAZyme
Location: 573303 - 574604 (+)
Gene ID: A49_contig_140_492
Type: TF
Location: 574674 - 575873 (+)
Type: TF
Location: 574674 - 575873 (+)
Gene ID: A49_contig_140_493
Type: CAZyme
Location: 575929 - 578370 (-)
Type: CAZyme
Location: 575929 - 578370 (-)
Gene ID: A49_contig_140_494
Type: TC
Location: 578974 - 580170 (+)
Type: TC
Location: 578974 - 580170 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A49_contig_140_492 | vegan > omnivore | 1.24346 | 0.00699 |