Cluster: A49.bin_13_CGC44
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: A49.bin_13
- CGC Family ID: CGCFAM_00010
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A49_contig_3606 | A49_contig_3606_84 | 93264 | 94745 | - | GH77 |
| TF | A49_contig_3606 | A49_contig_3606_85 | 94795 | 95799 | - | LacI |
| TC | A49_contig_3606 | A49_contig_3606_86 | 95833 | 96681 | - | 3.A.1.1.45 |
| TC | A49_contig_3606 | A49_contig_3606_87 | 96681 | 97532 | - | 3.A.1.1.45 |
| TC | A49_contig_3606 | A49_contig_3606_88 | 97662 | 99029 | - | 3.A.1.1.45 |
Gene ID: A49_contig_3606_84
Type: CAZyme
Location: 93264 - 94745 (-)
Type: CAZyme
Location: 93264 - 94745 (-)
Gene ID: A49_contig_3606_85
Type: TF
Location: 94795 - 95799 (-)
Type: TF
Location: 94795 - 95799 (-)
Gene ID: A49_contig_3606_86
Type: TC
Location: 95833 - 96681 (-)
Type: TC
Location: 95833 - 96681 (-)
Gene ID: A49_contig_3606_87
Type: TC
Location: 96681 - 97532 (-)
Type: TC
Location: 96681 - 97532 (-)
Gene ID: A49_contig_3606_88
Type: TC
Location: 97662 - 99029 (-)
Type: TC
Location: 97662 - 99029 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger formicilis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.